Update parabricks mutectcaller for sarek#11647
Open
gburnett-nvidia wants to merge 12 commits into
Open
Conversation
Contributor
Author
|
@nf-core-bot fix linting |
maxulysse
reviewed
Jul 16, 2026
Comment on lines
+12
to
+13
| tuple val(ref_meta), path(fasta) | ||
| tuple val(fai_meta), path(fasta_fai) |
Member
There was a problem hiding this comment.
Suggested change
| tuple val(ref_meta), path(fasta) | |
| tuple val(fai_meta), path(fasta_fai) | |
| tuple val(meta2), path(fasta), path(fasta_fai) |
maxulysse
reviewed
Jul 16, 2026
Comment on lines
+70
to
+74
| - - fai_meta: | ||
| type: map | ||
| description: | | ||
| Groovy Map containing reference index information | ||
| [ id:'homo_sapiens' ] |
Member
There was a problem hiding this comment.
Suggested change
| - - fai_meta: | |
| type: map | |
| description: | | |
| Groovy Map containing reference index information | |
| [ id:'homo_sapiens' ] |
Contributor
Author
There was a problem hiding this comment.
Done. Should be all resolved now!
maxulysse
reviewed
Jul 16, 2026
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Minor fixes to inputs and testing to support Sarek integration.