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Naturalis Biodiversity Center

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  1. barcode-constrained-phylogeny barcode-constrained-phylogeny Public

    Pipeline for building topologically-constrained phylogenies from DNA barcode data

    Python 2 3

Repositories

Showing 10 of 189 repositories
  • timegraft Public

    Dated barcode trees for phylogenetic diversity: per-genus subtrees from BOLD or UNITE, grafted onto a dated OToL/TimeTree backbone

    naturalis/timegraft's past year of commit activity
    Python 0 Apache-2.0 0 23 0 Updated Nov 15, 2026
  • evospaice Public

    Repository for the 2026 Microsoft hackathon in Dublin - Naturalis use case

    naturalis/evospaice's past year of commit activity
    Python 1 1 4 1 Updated Nov 15, 2026
  • sdmdl Public

    Species Distribution Modelling using Deep Learning

    naturalis/sdmdl's past year of commit activity
    Python 31 MIT 13 4 19 Updated Nov 4, 2026
  • BeeGees Public Forked from bge-barcoding/BeeGees

    Snakemake workflow for recovering barcode sequences from genome skim data generated from museum (hDNA) specimens.

    naturalis/BeeGees's past year of commit activity
    Python 0 MIT 4 0 0 Updated Oct 29, 2026
  • BIP Public Forked from cbg-innov/BIP

    Barcode Inference Pipeline

    naturalis/BIP's past year of commit activity
    Shell 0 3 0 0 Updated Oct 23, 2026
  • galaxy-tool-manage-zip Public

    Manage zip tool for galaxy (transferred from old galaxy)

    naturalis/galaxy-tool-manage-zip's past year of commit activity
    Shell 0 0 0 0 Updated Oct 9, 2026
  • galaxy-tool-lca Public
    naturalis/galaxy-tool-lca's past year of commit activity
    Python 3 3 1 1 Updated Oct 6, 2026
  • galaxy-tool-BLAST Public

    A new tool and wrapper for the identification with blastn

    naturalis/galaxy-tool-BLAST's past year of commit activity
    Python 0 2 2 1 Updated Oct 5, 2026
  • galaxy-tool-edentity-metabarcoding-pipeline Public
    naturalis/galaxy-tool-edentity-metabarcoding-pipeline's past year of commit activity
    Python 1 Apache-2.0 0 1 1 Updated Oct 1, 2026
  • galaxy-tool-prinseq-sequence-analysis Public

    transferred from old galaxy

    naturalis/galaxy-tool-prinseq-sequence-analysis's past year of commit activity
    Shell 0 0 0 0 Updated Oct 1, 2026
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