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MacManes Lab

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Oyster_River_Protocol Oyster_River_Protocol Public

Official Repository of the Oyster River Protocol for Transcriptome Assembly

Python 17 15
pytransrate pytransrate Public

Forked from blahah/transrate

Understand your transcriptome assembly

Python

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Showing 10 of 57 repositories

Oyster_River_Protocol Public
Official Repository of the Oyster River Protocol for Transcriptome Assembly

macmanes-lab/Oyster_River_Protocol's past year of commit activity

Python 17 CC0-1.0 15 24 4 Updated Oct 6, 2026
trinityrnaseq_2026 Public Forked from trinityrnaseq/trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly

macmanes-lab/trinityrnaseq_2026's past year of commit activity

Perl 0 BSD-3-Clause 318 0 0 Updated Oct 6, 2026
pytransrate Public Forked from blahah/transrate
Understand your transcriptome assembly

macmanes-lab/pytransrate's past year of commit activity

Python 0 33 0 0 Updated Sep 26, 2026
spatial Public

macmanes-lab/spatial's past year of commit activity

0 CC0-1.0 0 0 0 Updated May 24, 2023
G606_Phylogenetics Public
For Gen606 Phylogenetics lesson

macmanes-lab/G606_Phylogenetics's past year of commit activity

0 CC0-1.0 1 0 0 Updated May 3, 2023
DoveParentsRNAseq Public
Characterizing the neurogenomics of parental care in the rock dove

macmanes-lab/DoveParentsRNAseq's past year of commit activity

R 5 1 6 0 Updated Dec 29, 2021
orp_website Public
Website for Oyster River Protocol

macmanes-lab/orp_website's past year of commit activity

3 CC0-1.0 1 0 0 Updated Apr 22, 2021
driftR Public Forked from cjbattey/driftR
population genetic simulations with R and Shiny

macmanes-lab/driftR's past year of commit activity

R 0 10 0 0 Updated Nov 17, 2020
dnazoo_annotation Public
This is the code to reproduce the DNAzoo genome annotations.

macmanes-lab/dnazoo_annotation's past year of commit activity

Shell 1 GPL-3.0 1 1 0 Updated Jul 7, 2020
pecr_genome Public
Files used for pecr genome

macmanes-lab/pecr_genome's past year of commit activity

Shell 0 CC0-1.0 0 0 0 Updated May 27, 2020

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