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1. computational-cell-analytics/micro-sam computational-cell-analytics/micro-sam Public

   Segment Anything for Microscopy

   Jupyter Notebook 716 110

2. torch-em torch-em Public

   Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.

   Python 128 31

3. elf elf Public

   Utility functions for large-scale bio-image analysis.

   Python 64 22

4. z5 z5 Public

   Lightweight C++ and Python interface for datasets in zarr and N5 format

   C++ 134 31

5. cluster_tools cluster_tools Public

   Distributed segmentation for bio-image-analysis

   Python 42 15

6. DerThorsten/nifty DerThorsten/nifty Public

   A nifty library for graph based image segmentation.

   C++ 48 23