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Gene-level TPM is much higher than the sum of transcript-level TPMs
questionFurther information is requestedFurther information is requestedStatus: Open.#409 In ablab/IsoQuant;Using IsoQuant to create a global transcriptome across multiple long-read single-nuclei RNA-seq PacBio Kinnex samples
questionFurther information is requestedFurther information is requestedStatus: Open.#404 In ablab/IsoQuant;max_coverage issue for running IsoQuant
performanceIssues related to computational perfromanceIssues related to computational perfromanceStatus: Open.#391 In ablab/IsoQuant;Barcode collision in multi-sample single-cell runs
enhancementNew feature or requestNew feature or requestsingle-cellRelated to single-cell or spatial pipelineRelated to single-cell or spatial pipelineStatus: Open.#388 In ablab/IsoQuant;Running with Parse Biosciences single-cell long-read data using pre-called barcodes
single-cellRelated to single-cell or spatial pipelineRelated to single-cell or spatial pipelineStatus: Open.#387 In ablab/IsoQuant;Minimap2 configuration for direct RNA-seq
enhancementNew feature or requestNew feature or requestquestionFurther information is requestedFurther information is requestedStatus: Open.#381 In ablab/IsoQuant;Question: Using IsoQuant after Iso-Seq preprocessing pipeline for bulk long-read RNA-seq
questionFurther information is requestedFurther information is requestedStatus: Open.#380 In ablab/IsoQuant;Potential adverse effect of small chromosome coverage limit
performanceIssues related to computational perfromanceIssues related to computational perfromancequestionFurther information is requestedFurther information is requestedStatus: Open.#372 In ablab/IsoQuant;wrong gene_id assignment in transcript_models.gtf
algorithmIssue requires algorithmic improvementIssue requires algorithmic improvementweird resultsSomething looks odd in the resulting filesSomething looks odd in the resulting filesStatus: Open.#363 In ablab/IsoQuant;Q: best practices?
performanceIssues related to computational perfromanceIssues related to computational perfromanceStatus: Open.#357 In ablab/IsoQuant;Output transcript usage matrix.
enhancementNew feature or requestNew feature or requestStatus: Open.#352 In ablab/IsoQuant;Visualize.py with --find_genes
visualizerRelates to visualization moduleRelates to visualization moduleStatus: Open.#351 In ablab/IsoQuant;