Skip to content
@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

Pinned Loading

  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 399 164

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 27 16

Repositories

Showing 10 of 523 repositories
  • bmtk Public

    Brain Modeling Toolkit

    AllenInstitute/bmtk's past year of commit activity
    Python 338 BSD-3-Clause 102 68 9 Updated Oct 18, 2026
  • abc_atlas_access Public

    Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas

    AllenInstitute/abc_atlas_access's past year of commit activity
    Jupyter Notebook 126 41 21 7 Updated Oct 18, 2026
  • npc_lims Public

    Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

    AllenInstitute/npc_lims's past year of commit activity
    Python 0 MIT 1 4 2 Updated Oct 18, 2026
  • seaad_multiregion_trajectory_viewer Public

    Gene trajectory viewer for the SEA-AD multiregion data set.

    AllenInstitute/seaad_multiregion_trajectory_viewer's past year of commit activity
    R 0 0 1 0 Updated Oct 17, 2026
  • mouse-developing-vis-app Public

    App and documentation for viewing data from developing mouse cortex. Useful both on it's own and as an example for how such apps can be made more broadly from ABC Atlas Access data sets.

    AllenInstitute/mouse-developing-vis-app's past year of commit activity
    R 0 0 0 0 Updated Oct 17, 2026
  • biodata-schema Public

    Complete and accurate metadata for bioscience

    AllenInstitute/biodata-schema's past year of commit activity
    Python 3 MIT 0 67 1 Updated Oct 17, 2026
  • Introduction_to_Neuroglancer Public

    Workshop material aimed to introduce scientists to using neuroglancer, especially for EM and LM data.

    AllenInstitute/Introduction_to_Neuroglancer's past year of commit activity
    Python 0 0 0 1 Updated Oct 16, 2026
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder's past year of commit activity
    TypeScript 22 BSD-3-Clause 10 54 7 Updated Oct 16, 2026
  • MultiTaskMPN Public
    AllenInstitute/MultiTaskMPN's past year of commit activity
    Python 2 2 0 0 Updated Oct 16, 2026
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES's past year of commit activity
    IGOR Pro 30 11 290 5 Updated Oct 16, 2026
View all repositories