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build: update dependency @modelcontextprotocol/server to v2.3.1 #3619

Job	Run time
lint	2m 0s
build	36s
build-e2e-windows	32s
e2e-windows	-1s
Browser Compatibility Tests	0s
test	0s
e2e-snapshots	0s
publish-snapshots	0s
e2e-package-managers	0s
e2e	0s
	3m 7s