Issues

• raise minimum supported numpy version to ≥2.0.0

  decision neededupstream
  Task

  MDAnalysis/mdanalysis#5478 · Filter by author orbeckst opened on Sep 28, 2026
  2

  

• datafiles: MMCIF and DSSP export directories instead of one variable per file

  MDAnalysis/mdanalysis#5475 · Filter by author BradyAJohnston opened on Sep 23, 2026
  1

• AnalysisBase.run() misinterpretation of NumPy booleans frame masks as integer frame indices

  Component-Analysisdefect
  Bug

  MDAnalysis/mdanalysis#5472 · Filter by author sici17 opened on Sep 20, 2026
  1

• Proposal: Emscripten / Pyodide wheels

  installation
  MDAnalysis/mdanalysis#5469 · Filter by author IAlibay opened on Sep 10, 2026
  1

  

• [CI] parmed fails to build

  Continuous Integrationdefectupstream
  MDAnalysis/mdanalysis#5467 · Filter by author orbeckst opened on Sep 2, 2026

• PersistenceLength.run(start=, stop=) rescales entire results.bond_autocorrelation array by n_frames_processed / n_frames_total_trajectory

  Component-Analysis
  MDAnalysis/mdanalysis#5453 · Filter by author lslumass opened on Aug 8, 2026
  1

• Amber water topology might have 3 bonds per molecule. Should this be taken care of when loading those trajectories?

  Component-TopologyFormat-Amber
  MDAnalysis/mdanalysis#5450 · Filter by author pbuslaev opened on Jul 29, 2026
  4

• [GSoC 2026] Implementation of from_materials_projects()

  fetcherGSoC
  MDAnalysis/mdanalysis#5435 · Filter by author jauy123 opened on Jul 14, 2026
  1

• [GSoC 2026] Implementation of from_doi()

  fetcherGSoC
  MDAnalysis/mdanalysis#5434 · Filter by author jauy123 opened on Jul 14, 2026

• [GSoC 2026] Implementation of from_mddb()

  fetcherGSoC
  MDAnalysis/mdanalysis#5433 · Filter by author jauy123 opened on Jul 14, 2026
  2

• [GSoC 2026] Implementation of from_alphafold()

  fetcherGSoC
  MDAnalysis/mdanalysis#5432 · Filter by author jauy123 opened on Jul 14, 2026

• [GSoC 2026] Refactoring of from_pdb()

  fetcherGSoC
  MDAnalysis/mdanalysis#5431 · Filter by author jauy123 opened on Jul 14, 2026

• [GSoC 2026] Implementation of DynamicFetcher

  fetcherGSoC
  MDAnalysis/mdanalysis#5430 · Filter by author jauy123 opened on Jul 14, 2026

• [GSoC 2026] Implementation of Static Fetcher

  fetcherGSoC
  MDAnalysis/mdanalysis#5429 · Filter by author jauy123 opened on Jul 14, 2026

• guess_TopologyAttrs(to_guess=["elements"]) silently skips atoms with element="" (missing_value_label not set on Elements/Atomtypes)

  Component-TopologyFormat-PDB
  MDAnalysis/mdanalysis#5414 · Filter by author jfmoulin opened on Jun 30, 2026
  6

• REL: release 2.11.0

  release
  Task

  MDAnalysis/mdanalysis#5390 · Filter by author orbeckst opened on May 30, 2026 · 2.11
  3

  

• Revisit action to welcome new contributors on PRs

  Continuous Integration
  MDAnalysis/mdanalysis#5388 · Filter by author IAlibay opened on May 25, 2026

• Performance vs memory tradeoff, interested in subset of a universe

  Component-Docs
  MDAnalysis/mdanalysis#5380 · Filter by author mikesha2 opened on May 8, 2026
  4

• RFC: convert_units and sensibility

  Component-Writers
  MDAnalysis/mdanalysis#5378 · Filter by author tylerjereddy opened on May 7, 2026
  1

• ENH: support reading box vectors from TPR files

  enhancementFormat-Gromacs
  Feature

  MDAnalysis/mdanalysis#5375 · Filter by author tylerjereddy opened on May 5, 2026
  2

• logging.getLogger() should follow a standardized syntax.

  refactoring
  MDAnalysis/mdanalysis#5369 · Filter by author jauy123 opened on Apr 24, 2026
  4

• lib/log/NullHandler should be removed and be replaced with logging.NullHandler

  refactoring
  MDAnalysis/mdanalysis#5368 · Filter by author jauy123 opened on Apr 24, 2026
  2

• Calculating the rdf for norm = "rdf" or "density" at the same time.

  Component-Analysisusability
  Feature

  MDAnalysis/mdanalysis#5362 · Filter by author Soulchemist97 opened on Apr 15, 2026
  3

• Exposing the stream in the logging module

  usability
  MDAnalysis/mdanalysis#5357 · Filter by author jauy123 opened on Apr 3, 2026
  4

• Performance improvement: PCA could be much faster

  Component-Analysisperformance
  MDAnalysis/mdanalysis#5351 · Filter by author jberg5 opened on Mar 29, 2026