Issues

• Issue with pandas

  bug
  KrishnaswamyLab/MAGIC#230 · Filter by author dlnija opened on Feb 19, 2026

• Differential expression of the archetypes in eig(M) is too slow

  question
  KrishnaswamyLab/MAGIC#229 · Filter by author xingzhongyu opened on Feb 26, 2025
  1

• length = 3' in coercion to 'logical(1)

  bug
  KrishnaswamyLab/MAGIC#227 · Filter by author elizabethmcmillan opened on Nov 18, 2024
  2

• Is it possible to pass a custom embedding?

  question
  KrishnaswamyLab/MAGIC#224 · Filter by author zvittorio opened on Apr 4, 2024

• Is it a good idea to run magic on sctransform processed data?

  question
  KrishnaswamyLab/MAGIC#223 · Filter by author iichelhadi opened on Mar 20, 2024

• Rmagic

  bug
  KrishnaswamyLab/MAGIC#222 · Filter by author Chloe-HJL opened on Mar 14, 2024
  3

• Option for Computing KNN with some genes, but returning whole graph

  enhancement
  KrishnaswamyLab/MAGIC#221 · Filter by author Alistair-Turcan opened on Mar 10, 2024

• Name of the package confused with python-magic package

  bug
  KrishnaswamyLab/MAGIC#218 · Filter by author Rohit-Satyam opened on Jul 2, 2023

• ValueError: Length mismatch: Expected axis has 100 elements, new values have 10782 elements

  question
  KrishnaswamyLab/MAGIC#217 · Filter by author handesome opened on Jun 27, 2023

• magic() function error: Stuck on "Calculating PCA..."

  bug
  KrishnaswamyLab/MAGIC#216 · Filter by author StefanosVoglis opened on Mar 28, 2023
  1

• Rmagic was removed from the CRAN repository

  bug
  KrishnaswamyLab/MAGIC#215 · Filter by author kuang-da opened on Jan 30, 2023
  3

• Animate MAGIC error

  bug
  KrishnaswamyLab/MAGIC#214 · Filter by author JLTrincado opened on Nov 16, 2022

• problem running magic

  question
  KrishnaswamyLab/MAGIC#213 · Filter by author AmitElad opened on Nov 13, 2022
  1

• Does it really run in parallel?

  question
  KrishnaswamyLab/MAGIC#212 · Filter by author LucaTucciarone opened on Nov 11, 2022
  1

• Error: package or namespace load failed for 'Rmagic':

  question
  KrishnaswamyLab/MAGIC#211 · Filter by author Gabby4548 opened on Nov 1, 2022
  5

• MAGIC on RNA + ATAC data

  question
  KrishnaswamyLab/MAGIC#210 · Filter by author yamajackr opened on Oct 28, 2022
  5

• NaN values when computing the kernel lead to inability to find t-optimal MATLAB.

  KrishnaswamyLab/MAGIC#206 · Filter by author ElenaMerinoTejero opened on Oct 7, 2022

• Running UMAP after Magic - is it valid?

  question
  KrishnaswamyLab/MAGIC#205 · Filter by author ncom94 opened on Sep 25, 2022

• Magic + seurat workflow

  question
  KrishnaswamyLab/MAGIC#204 · Filter by author anemartinezlarrinaga2898 opened on Sep 20, 2022
  4

• Suggestions for Unable to allocate 276. GiB for an array with shape (161877, 228942) and data type float64

  question
  KrishnaswamyLab/MAGIC#203 · Filter by author bitcometz opened on Sep 6, 2022

• Magic issue with mkl

  bug
  KrishnaswamyLab/MAGIC#202 · Filter by author abhay0305 opened on May 11, 2022

• magic

  bug
  KrishnaswamyLab/MAGIC#201 · Filter by author abhay0305 opened on May 11, 2022

• Diffusion operator construction

  question
  KrishnaswamyLab/MAGIC#200 · Filter by author qubit0 opened on May 6, 2022

• MAGIC and batches

  KrishnaswamyLab/MAGIC#199 · Filter by author AVitriolo opened on Feb 4, 2022
  1

• Error: cause segfault, cause 'invalid permissions'

  question
  KrishnaswamyLab/MAGIC#198 · Filter by author xxxcha opened on Aug 17, 2021